Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs79752040 chr6:53527285 A/G 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs79905210 chr6:53523634 T/C 6.9E-5 373 22.3 24.5 7.13 KM Plot
CRC rs80043078 chr7:62059486 G/GT 7.57E-6 364 23.37 20.3 14.37 KM Plot
CRC rs80310300 chr5:56215203 G/A 4.2E-8 373 22.4 19.93 5.2 KM Plot
CRC rs8071508 chr17:755120 C/T 0 374 22.32 23.83 1.63 KM Plot
CRC rs8119390 chr20:1472296 A/G 4.49E-5 374 12.13 25.4 22.2 KM Plot
CRC rs8188512 chr7:62127063 G/A 4.23E-6 368 24.2 20.23 14.37 KM Plot
CRC rs8188526 chr7:62114917 G/A 6.58E-7 370 24.33 19.93 11.27 KM Plot
CRC rs894469 chr1:146672906 C/T 8.53E-6 373 10.6 25.43 21.9 KM Plot
CRC rs9292090 chr5:54657440 A/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs9358901 chr6:26024436 G/T 2.92E-5 368 18.3 24.73 21.43 KM Plot
CRC rs9364355 chr6:169562742 C/G 2.55E-6 374 12.77 22.3 22.38 KM Plot
CRC rs9401519 chr6:122683440 A/C 4.64E-6 374 6.87 22.33 22.53 KM Plot
CRC rs9467664 chr6:26021813 A/T 6.04E-5 368 18.5 25.18 20.4 KM Plot
CRC rs9642204 chr7:61097320 A/T 1.17E-6 369 10.27 20.27 24.15 KM Plot